Tag: R

• Clustering Using SVD on Omics Data

  For Michigan, I’ve since applied the SVD based sorting algorithm, which can be used for clustering, to real data. The goal is to in some way model the relationship of proteins and metabolites, come up with modules, or groups of proteins and metabolites that were related, and then use these later in a regression model…

  likelyandre

  August 11, 2022

  Uncategorized

  applied math, linearalgebra, machinelearning, metabolites, omics, proteins, R, statistics, svd

• Clustering Using SVD

  Dr. Murthy and I have been working on a way to interpret omics data. We’d like to see if there’s any natural grouping structure to a large dataset. We’ve computed something resembling a cross covariance matrix. After Dr. Murthy experimented with sparse CCA for a while, we tried some other clustering methods or regularization methods…

  likelyandre

  June 13, 2022

  Uncategorized

  applied math, clustering, R, statistics, svd